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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107494462_107501052_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107494462 - 107501052
Intron Length:
6591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TATCATCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
AGTTGTATAATT
Flanking Amino Acid:
IVTVVYEDSTGLIRLQELIK
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
79.4
0.73
1
80.1
32
Major PPT
81.2
0.7
0.8
77.7
36
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
49.8
0.07
2
71.82
39.5

Associated Gene:

Gene:
GRIK1
Ensembl Gene ID:
ENSAPLG00000003999
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004177
107426080 - 107594296
168217
ENSAPLT00000045773
107426080 - 107594296
168217
ENSAPLT00000029805
107426080 - 107594296
168217
ENSAPLT00000022994
107426080 - 107594296
168217
ENSAPLT00000020678
107426080 - 107594296
168217
ENSAPLT00000047234
107426080 - 107594296
168217