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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107738843_107740065_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107738843 - 107740065
Intron Length:
1223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTTTGTATC
5'SS Class:
major
3'SS Sequence:
CTTTCTTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGTTTTTTAACT
Flanking Amino Acid:
WKKEPELAAFVFKTAVVLVY
Intron Amino Acid Position:
1310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.2
71.8
37.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
88.3
0.86
0.7
80.9
31.2
Minor 5ss
42.9
-0.8
2.5
52.7
38.3
Minor BPS
83
1.11
1
92.13
30.1

Associated Gene:

Gene:
TIAM1
Ensembl Gene ID:
ENSAPLG00000003481
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033979
107737037 - 107850332
113296
ENSAPLT00000027579
107737037 - 107851905
114869
ENSAPLT00000003593
107737037 - 107838759
101723
ENSAPLT00000047279
107737037 - 107850486
113450