About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107742127_107742256_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107742127 - 107742256
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
AAATACCTATTT
Flanking Amino Acid:
VDSEEHYHLDVAIKTMNKVA
Intron Amino Acid Position:
1234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
72.2
37.2
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
80.4
0.68
0.7
73
31.9
Minor 5ss
33.7
-1.9
3.1
41.4
39.1
Minor BPS
45.3
-0.2
2
62.73
40.8

Associated Gene:

Gene:
TIAM1
Ensembl Gene ID:
ENSAPLG00000003481
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003593
107737037 - 107838759
101723
ENSAPLT00000047279
107737037 - 107850486
113450
ENSAPLT00000033979
107737037 - 107850332
113296
ENSAPLT00000027579
107737037 - 107851905
114869