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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107746972_107747302_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107746972 - 107747302
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTATTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTGAT
U12 Branch Point Sequence:
TTTCTCTTATTA
Flanking Amino Acid:
QKETFLTPDELDVLFGNLTE
Intron Amino Acid Position:
1096

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
72.9
34.5
Major BPS
61.1
0.28
1.2
52.7
43.2
Major PPT
81.3
0.71
0.8
82.4
27.8
Minor 5ss
49.2
-0
2.5
63.9
47.7
Minor BPS
65.6
0.49
1.5
76.26
35.1

Associated Gene:

Gene:
TIAM1
Ensembl Gene ID:
ENSAPLG00000003481
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027579
107737037 - 107851905
114869
ENSAPLT00000003593
107737037 - 107838759
101723
ENSAPLT00000047279
107737037 - 107850486
113450
ENSAPLT00000033979
107737037 - 107850332
113296