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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107747372_107747796_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107747372 - 107747796
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTGAATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTTCTGAATT
Flanking Amino Acid:
LLETERTYVKDLNCLMERYL
Intron Amino Acid Position:
1073

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
75.8
33.6
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
73.7
0.53
0.9
70.3
40
Minor 5ss
32.6
-2
3.7
46.6
43.4
Minor BPS
78.4
0.97
1.2
92.49
29.5

Associated Gene:

Gene:
TIAM1
Ensembl Gene ID:
ENSAPLG00000003481
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033979
107737037 - 107850332
113296
ENSAPLT00000027579
107737037 - 107851905
114869
ENSAPLT00000003593
107737037 - 107838759
101723
ENSAPLT00000047279
107737037 - 107850486
113450