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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107774213_107778112_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107774213 - 107778112
Intron Length:
3900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATGCTA
5'SS Class:
major
3'SS Sequence:
TTCTTCTATTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTCTTCTATT
Flanking Amino Acid:
PKPEEDIYELLYKEIEICQK
Intron Amino Acid Position:
846

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.1
64.2
41.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.9
0.81
0.8
85.1
28.5
Minor 5ss
34.5
-1.8
3.4
44.4
44.5
Minor BPS
61.5
0.44
1.8
83.99
37

Associated Gene:

Gene:
TIAM1
Ensembl Gene ID:
ENSAPLG00000003481
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033979
107737037 - 107850332
113296
ENSAPLT00000027579
107737037 - 107851905
114869
ENSAPLT00000003593
107737037 - 107838759
101723
ENSAPLT00000047279
107737037 - 107850486
113450