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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107787324_107789735_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107787324 - 107789735
Intron Length:
2412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
GTGGCATTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
CAACCTTTGATT
Flanking Amino Acid:
IFSVSSFHALVAARTGESGV
Intron Amino Acid Position:
680

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.5
41.9
Major BPS
84
0.85
0.9
75
39.9
Major PPT
60.2
0.23
1.1
53.8
45
Minor 5ss
38
-1.4
3
47.2
42.5
Minor BPS
57.7
0.32
1.2
65.68
39.2

Associated Gene:

Gene:
TIAM1
Ensembl Gene ID:
ENSAPLG00000003481
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047279
107737037 - 107850486
113450
ENSAPLT00000033979
107737037 - 107850332
113296
ENSAPLT00000027579
107737037 - 107851905
114869
ENSAPLT00000003593
107737037 - 107838759
101723