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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107795716_107797266_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107795716 - 107797266
Intron Length:
1551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGAGC
5'SS Class:
major
3'SS Sequence:
TTGTCTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGCTTACTAATA
Flanking Amino Acid:
KWKHYWVSLKGCTLFFYETD
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
68
43.2
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
81.2
0.7
0.8
74
36.7
Minor 5ss
31.5
-2.1
3.3
43.1
44.1
Minor BPS
48.3
-0.1
1.9
61.51
38.7

Associated Gene:

Gene:
TIAM1
Ensembl Gene ID:
ENSAPLG00000003481
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033979
107737037 - 107850332
113296
ENSAPLT00000027579
107737037 - 107851905
114869
ENSAPLT00000003593
107737037 - 107838759
101723
ENSAPLT00000047279
107737037 - 107850486
113450