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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1077986_1078127_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1077986 - 1078127
Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TATTCTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TCCTCTTCAATT
Flanking Amino Acid:
HVFTNHIVFQFDCTNTLNDQ
Intron Amino Acid Position:
660

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
86.5
0.82
0.7
81.4
30.1
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
64.1
0.52
1.5
75.4
42.3

Associated Gene:

Gene:
COPG2
Ensembl Gene ID:
ENSAPLG00000007961
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008331
1061986 - 1078387
16402