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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107811586_107838734_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107811586 - 107838734
Intron Length:
27149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGCGC
5'SS Class:
major
3'SS Sequence:
TCTTCCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
GCCTATGTAACG
Flanking Amino Acid:
MFVLLMMNDCEAMGNAES
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
59.1
45.8
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
86.6
0.82
0.7
81
24.1
Minor 5ss
31.6
-2.1
3.3
42.7
44.3
Minor BPS
44.6
-0.5
2.2
48.23
45.4

Associated Gene:

Gene:
TIAM1
Ensembl Gene ID:
ENSAPLG00000003481
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003593
107737037 - 107838759
101723