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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107811586_107850272_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107811586 - 107850272
Intron Length:
38687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
GCCTATGTAACG
Flanking Amino Acid:
TFLLSSVTPPYCEAMGNAES
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
79.5
28.3
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
86.6
0.82
0.7
81
24.1
Minor 5ss
33
-1.9
2.8
41.3
38.3
Minor BPS
44.6
-0.5
2.2
48.23
45.4

Associated Gene:

Gene:
TIAM1
Ensembl Gene ID:
ENSAPLG00000003481
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027579
107737037 - 107851905
114869
ENSAPLT00000047279
107737037 - 107850486
113450