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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107816609_107850272_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
107816609 - 107850272
Intron Length:
33664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TTTGTCTGATTC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
79.5
28.3
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
80.6
0.69
0.7
73
31.9
Minor 5ss
33
-1.9
2.8
41.3
38.3
Minor BPS
50.3
-0
1.8
66.34
39.9

Associated Gene:

Gene:
TIAM1
Ensembl Gene ID:
ENSAPLG00000003481
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033979
107737037 - 107850332
113296