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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107850333_107851768_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107850333 - 107851768
Intron Length:
1436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAATAGGA
5'SS Class:
major
3'SS Sequence:
TTTTCTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTCTTTTCTATT
Flanking Amino Acid:
LNLCTTARSTGAARDGKWFP
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
58.9
40.5
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
89.3
0.88
0.7
81.9
34.4
Minor 5ss
29.4
-2.4
3.3
30.2
42.8
Minor BPS
49.2
0.02
1.8
70.85
40.8

Associated Gene:

Gene:
TIAM1
Ensembl Gene ID:
ENSAPLG00000003481
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027579
107737037 - 107851905
114869