Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107890982_107891116_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

107890982 - 107891116

Intron Length:

135

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATATATA

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTTTTATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAGTAT

U12 Branch Point Sequence:

CTTTCTTTTATA

Flanking Amino Acid:

PGFNPMHLPPGFLPPGPPPP

Intron Amino Acid Position:

723

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

0.9

82.1

30.4

Major BPS

59.8

0.24

1.5

60.1

46.3

Major PPT

87.8

0.85

0.6

83.7

24.5

Minor 5ss

44.8

-0.6

2.7

59.5

45.1

Minor BPS

0.5

1.6

74.49

37.5

Associated Gene:

Gene:

SCAF4

Ensembl Gene ID:

ENSAPLG00000002509

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037883

107881662 - 107926653

44992

ENSAPLT00000002619

107881662 - 107926653

44992