About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107896417_107897878_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107896417 - 107897878
Intron Length:
1462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTAT
5'SS Class:
strong_major
3'SS Sequence:
AACTTATTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTCTTCTGAACT
Flanking Amino Acid:
GMLDNETLSPEWKGIPKKSE
Intron Amino Acid Position:
617

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
84.7
28.2
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
76.9
0.61
0.9
70.2
39.5
Minor 5ss
38.4
-1.3
3.4
55
49.2
Minor BPS
75.5
0.88
1.4
88.41
36.6

Associated Gene:

Gene:
SCAF4
Ensembl Gene ID:
ENSAPLG00000002509
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037883
107881662 - 107926653
44992
ENSAPLT00000002619
107881662 - 107926653
44992