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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107904431_107904765_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107904431 - 107904765
Intron Length:
335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTTGAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TTTTTCCTAACT
Flanking Amino Acid:
GMQQDPMRHQVPLPPNGQMP
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
77.7
33.5
Major BPS
72
0.55
1
71.8
31.4
Major PPT
67.7
0.4
1.2
71
39
Minor 5ss
46
-0.4
2.5
59.7
44.7
Minor BPS
78.6
0.97
1.6
96.51
28.3

Associated Gene:

Gene:
SCAF4
Ensembl Gene ID:
ENSAPLG00000002509
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037883
107881662 - 107926653
44992
ENSAPLT00000002619
107881662 - 107926653
44992