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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107906078_107906618_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
107906078 - 107906618
Intron Length:
541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
GTTTTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
ATTACATGATCA
Flanking Amino Acid:
APSPSVSQPALTSLSFSAQA
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
82.6
30.5
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
84.9
0.79
0.8
80.2
32
Minor 5ss
48.7
-0.1
2.8
73.2
37.2
Minor BPS
47.8
-0.1
2
65.33
40.2

Associated Gene:

Gene:
SCAF4
Ensembl Gene ID:
ENSAPLG00000002509
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002619
107881662 - 107926653
44992