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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107907209_107907762_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107907209 - 107907762
Intron Length:
554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACATGT
5'SS Class:
major
3'SS Sequence:
GTGTTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTATTTAATA
Flanking Amino Acid:
QLFQTTQGQQLQQILQTFQQ
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
72.5
39.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.9
0.74
0.9
77.3
37
Minor 5ss
45.2
-0.5
3
65.7
45.3
Minor BPS
71.7
0.68
1.4
78.61
31.3

Associated Gene:

Gene:
SCAF4
Ensembl Gene ID:
ENSAPLG00000002509
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037883
107881662 - 107926653
44992
ENSAPLT00000002619
107881662 - 107926653
44992