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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107907903_107910378_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
107907903 - 107910378
Intron Length:
2476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAATG
5'SS Class:
strong_major
3'SS Sequence:
ATGGAAATTTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
TTTTTGTCCATT
Flanking Amino Acid:
PMTENATNNEGSPPPPAKVT
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
77.2
37.7
Major BPS
67.7
0.44
1
58
38.9
Major PPT
58.8
0.2
1
53.2
45.2
Minor 5ss
43.2
-0.7
2.9
57.1
47.2
Minor BPS
45.7
-0.2
2.5
75.15
42.4

Associated Gene:

Gene:
SCAF4
Ensembl Gene ID:
ENSAPLG00000002509
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037883
107881662 - 107926653
44992
ENSAPLT00000002619
107881662 - 107926653
44992