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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107914736_107926586_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107914736 - 107926586
Intron Length:
11851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGAGCC
5'SS Class:
major
3'SS Sequence:
TTTTTCTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ACATTTTTAATA
Flanking Amino Acid:
MEAVNAFNQELFSLMEMKPP
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
63.2
36.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
94.2
0.99
0.5
93.1
16
Minor 5ss
24.9
-2.9
3.3
32.9
42.4
Minor BPS
65.7
0.49
1.1
65.51
35.4

Associated Gene:

Gene:
SCAF4
Ensembl Gene ID:
ENSAPLG00000002509
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037883
107881662 - 107926653
44992
ENSAPLT00000002619
107881662 - 107926653
44992