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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107940864_107941426_R

Intron Information:

Intron Rank:
144211
Intron Class:
major
Intron Phase:
Intron Coordinates:
107940864 - 107941426
Intron Length:
563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTATTTCAAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCTTTCTAAAGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
86.9
30.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
70.5
0.46
1
67.4
37.9
Minor 5ss
34.8
-1.7
3.2
50.1
46.4
Minor BPS
52.4
-0
2
61.99
46.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024842
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030593
107940539 - 107941833
1295