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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107940867_107951592_R

Intron Information:

Intron Rank:
144210
Intron Class:
major
Intron Phase:
Intron Coordinates:
107940867 - 107951592
Intron Length:
10726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTCCA
5'SS Class:
major
3'SS Sequence:
TTTCTATTTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCTTTCTAAAGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
64.5
41.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
77.5
0.62
1
76
37.2
Minor 5ss
36.5
-1.5
2.9
43.6
43.3
Minor BPS
52.4
-0
2
61.99
46.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024842
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025768
107940539 - 107951836
11298