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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107972063_107979715_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
107972063 - 107979715
Intron Length:
7653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATTAT
U12 Branch Point Sequence:
GCTCACTCAAAA
Flanking Amino Acid:
EHLHRAGVVHRDLKIENLLL
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
80.7
34.7
Major BPS
72.1
0.55
1.1
62.3
43.7
Major PPT
90.3
0.91
0.7
88.9
28.1
Minor 5ss
49.9
-0
2.8
73.7
42.8
Minor BPS
47.1
-0.2
1.8
56.84
41.4

Associated Gene:

Gene:
HUNK
Ensembl Gene ID:
ENSAPLG00000002063
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002104
107952157 - 108006909
54753