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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107979772_107985296_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107979772 - 107985296
Intron Length:
5525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGAAAC
5'SS Class:
major
3'SS Sequence:
ATGCTTTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCTTTCATAACT
Flanking Amino Acid:
LDEDNNIKLIDFGLSNCAGI
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
69.5
34.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
77.8
0.62
0.9
72.2
37.3
Minor 5ss
40
-1.1
2.8
48.8
41.7
Minor BPS
73.2
0.81
1.6
88.42
36.6

Associated Gene:

Gene:
HUNK
Ensembl Gene ID:
ENSAPLG00000002063
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002104
107952157 - 108006909
54753