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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107985433_107987251_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
107985433 - 107987251
Intron Length:
1819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
GTTTCTTTTATT
Flanking Amino Acid:
KYGPKIDVWSIGVNMYAMLT
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
76.5
27.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.6
0.82
0.7
85.5
29.2
Minor 5ss
37.5
-1.4
2.9
48
41.4
Minor BPS
69.8
0.7
1.5
84.47
36.2

Associated Gene:

Gene:
HUNK
Ensembl Gene ID:
ENSAPLG00000002063
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002104
107952157 - 108006909
54753