About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107987380_107993143_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107987380 - 107993143
Intron Length:
5764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCAAA
5'SS Class:
strong_major
3'SS Sequence:
GATTTCTTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTTTCTTGATT
Flanking Amino Acid:
MNPFPTQLSTAAVNFLRSLL
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
76.1
35
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
78.8
0.65
0.9
72.5
37.4
Minor 5ss
38.8
-1.3
2.8
48.7
47.1
Minor BPS
83.2
1.13
0.9
94.4
25.5

Associated Gene:

Gene:
HUNK
Ensembl Gene ID:
ENSAPLG00000002063
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002104
107952157 - 108006909
54753