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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107997884_107998814_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107997884 - 107998814
Intron Length:
931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TATACTTTGATT
Flanking Amino Acid:
KLERYLASLRKSEGQDNICH
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.4
33.4
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
81.2
0.7
0.7
75.9
26.2
Minor 5ss
42.4
-0.8
2.8
51.5
44.9
Minor BPS
69.3
0.69
1.2
80.44
35.4

Associated Gene:

Gene:
HUNK
Ensembl Gene ID:
ENSAPLG00000002063
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002104
107952157 - 108006909
54753