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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_107998899_108003723_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
107998899 - 108003723
Intron Length:
4825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGCTC
5'SS Class:
strong_major
3'SS Sequence:
TTACAACCTAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TGTTTTACAACC
Flanking Amino Acid:
KYKANKDSYEDKKLKEQEKK
Intron Amino Acid Position:
520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
70.2
40.3
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
59.5
0.21
1.1
57.4
37.5
Minor 5ss
34.7
-1.7
3.5
50.1
46.5
Minor BPS
51.7
0.03
1.8
68
37.3

Associated Gene:

Gene:
HUNK
Ensembl Gene ID:
ENSAPLG00000002063
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002104
107952157 - 108006909
54753