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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108109328_108109905_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108109328 - 108109905
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTACCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTACCTTACAG
Flanking Amino Acid:
RAALEEALERADTILKALEA
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
75.5
40.6
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
80.8
0.69
0.9
73.3
37
Minor 5ss
37.5
-1.4
3.3
49.3
46.4
Minor BPS
60.2
0.18
1.9
69.62
43.2

Associated Gene:

Gene:
MIS18A
Ensembl Gene ID:
ENSAPLG00000028677
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037927
108108454 - 108111498
3045