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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108110000_108110758_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108110000 - 108110758
Intron Length:
759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGCA
5'SS Class:
major
3'SS Sequence:
TGTAGCATATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
ATGATCTAAACT
Flanking Amino Acid:
LFCFNVDSIESYTLGSSEKQ
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.1
35.5
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
64
0.31
1.1
60.4
44.6
Minor 5ss
28.9
-2.4
3.5
38.8
46.5
Minor BPS
58.9
0.36
1.7
74.5
42.4

Associated Gene:

Gene:
MIS18A
Ensembl Gene ID:
ENSAPLG00000028677
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037927
108108454 - 108111498
3045