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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108110882_108111038_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108110882 - 108111038
Intron Length:
157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGCGC
5'SS Class:
major
3'SS Sequence:
TTTTCCCTCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAC
U12 Branch Point Sequence:
TTTCCCTCAAAG
Flanking Amino Acid:
KLSKRPGECGCMIETLFCSG
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
56.6
42.5
Major BPS
69.5
0.49
1
71.8
33.3
Major PPT
74.2
0.55
1
75.1
27.5
Minor 5ss
25.8
-2.8
3.1
29.7
37.2
Minor BPS
62.7
0.26
1.8
71.14
41.1

Associated Gene:

Gene:
MIS18A
Ensembl Gene ID:
ENSAPLG00000028677
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037927
108108454 - 108111498
3045