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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108117045_108118152_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108117045 - 108118152
Intron Length:
1108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TAGCTCTCTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ACTCTGTGAAAA
Flanking Amino Acid:
YMSRSGSSPVKSKPIFYSFL
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
64.8
0.33
1.1
64.6
36.5
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
42.9
-0.5
2.1
53
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001227
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001217
108112088 - 108118276
6189