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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108134177_108134843_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108134177 - 108134843
Intron Length:
667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
GTCTTCCTAATG
Flanking Amino Acid:
LTWILHILEKRFLENKLLNK
Intron Amino Acid Position:
1876

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1.1
72.7
44.5
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
89
0.88
0.8
87.9
29.5
Minor 5ss
40.7
-1
2.6
51.6
44.9
Minor BPS
54.9
0.02
1.8
60.16
42.1

Associated Gene:

Gene:
URB1
Ensembl Gene ID:
ENSAPLG00000012791
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013351
108130822 - 108175484
44663
ENSAPLT00000042001
108130822 - 108171940
41119