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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108143044_108144831_R

Intron Information:

Intron Rank:
28
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
108143044 - 108144831
Intron Length:
1788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
AACAATGTTTAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTACTTTTAACA
Flanking Amino Acid:
EKNNQSLIKSGNLLWGPAAV
Intron Amino Acid Position:
1573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
71.1
37.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
52.5
0.06
1.2
52.9
45
Minor 5ss
33.7
-1.9
2.8
31.8
42.6
Minor BPS
72.9
0.72
1.1
77.26
33

Associated Gene:

Gene:
URB1
Ensembl Gene ID:
ENSAPLG00000012791
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042001
108130822 - 108171940
41119
ENSAPLT00000013351
108130822 - 108175484
44663