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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108144896_108144983_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108144896 - 108144983
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGACTTTGGATT
Flanking Amino Acid:
GAYGATLSTVDQKILLLLQL
Intron Amino Acid Position:
1552

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
70.6
41.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
89.5
0.89
0.7
88.9
28.2
Minor 5ss
39.7
-1.2
2.8
49
47.2
Minor BPS
47.8
-0
1.4
61.9
35.9

Associated Gene:

Gene:
URB1
Ensembl Gene ID:
ENSAPLG00000012791
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013351
108130822 - 108175484
44663
ENSAPLT00000042001
108130822 - 108171940
41119