Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108148235_108148326_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

108148235 - 108148326

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGCAAA

5'SS Class:

strong_major

3'SS Sequence:

TGTGTTTCCACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATGAAT

U12 Branch Point Sequence:

TATGTATGAATG

Flanking Amino Acid:

AALEKAGNNESWMVADAVSR

Intron Amino Acid Position:

1371

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.1

0.97

0.8

83.2

30.8

Major BPS

66.8

0.42

1.4

75.9

36.3

Major PPT

78.2

0.64

0.9

72.5

37.8

Minor 5ss

38.7

-1.3

2.8

48.1

47.6

Minor BPS

46.9

-0.3

1.8

54.18

Associated Gene:

Gene:

URB1

Ensembl Gene ID:

ENSAPLG00000012791

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042001

108130822 - 108171940

41119

ENSAPLT00000013351

108130822 - 108175484

44663