Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108155377_108158365_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

108155377 - 108158365

Intron Length:

2989

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCTGGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTCTGGACA

Flanking Amino Acid:

KISTKKLIIKVLHDSGVFEY

Intron Amino Acid Position:

676

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

98.4

1.14

0.6

94.3

17.7

Major BPS

96.5

1.15

0.6

34.2

Major PPT

78.1

0.63

76.3

37.8

Minor 5ss

38.6

-1.3

3.4

57.8

46.8

Minor BPS

72.2

0.69

1.4

82.85

Associated Gene:

Gene:

URB1

Ensembl Gene ID:

ENSAPLG00000012791

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013351

108130822 - 108175484

44663

ENSAPLT00000042001

108130822 - 108171940

41119