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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108158486_108159201_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108158486 - 108159201
Intron Length:
716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTATAT
Flanking Amino Acid:
ANKFAWFRVQDVSETEKTAG
Intron Amino Acid Position:
636

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.8
0.76
0.8
77
36.7
Minor 5ss
37.9
-1.4
3.3
56.5
47.6
Minor BPS
52.7
0.16
1.9
76.71
39.4

Associated Gene:

Gene:
URB1
Ensembl Gene ID:
ENSAPLG00000012791
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042001
108130822 - 108171940
41119
ENSAPLT00000013351
108130822 - 108175484
44663