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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108164711_108165081_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108164711 - 108165081
Intron Length:
371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGAGCA
5'SS Class:
major
3'SS Sequence:
TTCCCTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
ATATCATGAATT
Flanking Amino Acid:
NKIMFTQGLNLPSKVVKHSI
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
70.8
33
Major BPS
79.4
0.73
1
80.1
32
Major PPT
84.7
0.78
0.7
76.7
32
Minor 5ss
33.1
-1.9
3.4
44.3
43.3
Minor BPS
60.6
0.41
1.7
78
37.7

Associated Gene:

Gene:
URB1
Ensembl Gene ID:
ENSAPLG00000012791
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013351
108130822 - 108175484
44663
ENSAPLT00000042001
108130822 - 108171940
41119