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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108171079_108171807_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108171079 - 108171807
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCTTTCTTTAAG
Flanking Amino Acid:
PGLVKKRDKKGRPDVRMAYI
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
82.6
24.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
81.7
0.71
0.9
86.9
24.4
Minor 5ss
38.9
-1.3
2.9
49
47.2
Minor BPS
56.1
0.05
1.9
63.92
43.8

Associated Gene:

Gene:
URB1
Ensembl Gene ID:
ENSAPLG00000012791
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013351
108130822 - 108175484
44663