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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108198424_108201580_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108198424 - 108201580
Intron Length:
3157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCGCAT
5'SS Class:
major
3'SS Sequence:
CCCGTTGTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTGTTTTCAAGA
Flanking Amino Acid:
INCVAPTSLQKVLDECQNLR
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.2
62.2
43.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
69
0.43
0.9
60.5
40.4
Minor 5ss
44.1
-0.6
3.2
64.4
47
Minor BPS
52.8
0.08
1.8
66.45
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012781
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013307
108184803 - 108218772
33970