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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108204470_108213508_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108204470 - 108213508
Intron Length:
9039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGTTAC
5'SS Class:
major
3'SS Sequence:
ATTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTGTATTTATG
Flanking Amino Acid:
SAEAERVPPFDCLSYTALEV
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
71.4
35
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
91.3
0.93
0.7
89.4
26.5
Minor 5ss
47.1
-0.3
2.5
61.4
43.6
Minor BPS
44.8
-0.5
2
52.44
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012781
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013307
108184803 - 108218772
33970