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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108213653_108216102_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108213653 - 108216102
Intron Length:
2450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TTTGCCTTTCTT
Flanking Amino Acid:
TKYLNVSYACVPKFILTAVN
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.5
33.4
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
91.3
0.93
0.6
84.4
30.6
Minor 5ss
30.9
-2.2
3.3
36.6
41.5
Minor BPS
44.2
-0.3
3.6
79.54
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012781
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013307
108184803 - 108218772
33970