About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108216184_108217047_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108216184 - 108217047
Intron Length:
864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTAAA
5'SS Class:
major
3'SS Sequence:
CCTCTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTACAA
U12 Branch Point Sequence:
TTTGCTTTACCT
Flanking Amino Acid:
SSVKLNDGEHGIDIDPKESR
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
77.8
31.4
Major BPS
61
0.27
1.1
69.2
36.3
Major PPT
81.1
0.7
0.8
75.6
32.8
Minor 5ss
35.3
-1.7
2.7
39.2
40.4
Minor BPS
69.3
0.69
1.7
87.23
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012781
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013307
108184803 - 108218772
33970