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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108226962_108227061_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108226962 - 108227061
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCAGTG
5'SS Class:
major
3'SS Sequence:
CTTCTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
CTTCTCTTCACA
Flanking Amino Acid:
YYYKKQEELKKLEEDDDDSF
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.2
60.8
44.4
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
84.3
0.77
0.7
79.3
26.3
Minor 5ss
38.2
-1.3
3.7
55.2
49
Minor BPS
60.8
0.33
1.8
72.02
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012558
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013089
108226851 - 108234543
7693
ENSAPLT00000043519
108226851 - 108235160
8310