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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108229463_108229707_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108229463 - 108229707
Intron Length:
245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
GCCTGTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCTACAGTAAAT
Flanking Amino Acid:
DLSFFAIVSKKQVQANVCVN
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
73.6
0.53
0.9
69.3
40.5
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
46.9
-0.1
2.3
71.28
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012558
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013089
108226851 - 108234543
7693