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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108229783_108231660_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108229783 - 108231660
Intron Length:
1878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTATCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATTATCTGAAAG
Flanking Amino Acid:
IEEAKALISKMFVTKCLLHK
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.2
1.16
0.6
97
9.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
74.7
0.56
0.8
68.3
30.8
Minor 5ss
46.1
-0.4
2.8
66.9
44.4
Minor BPS
52.9
-0
1.7
60.87
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012558
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013089
108226851 - 108234543
7693