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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108233625_108234404_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
108233625 - 108234404
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGCC
5'SS Class:
major
3'SS Sequence:
AAACGCTTTAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GGTTTCTAACCT
Flanking Amino Acid:
GRLKVQRLCAEMQELAEHGV
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.2
60.6
40.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
55.4
0.12
1.1
52.5
40.9
Minor 5ss
35
-1.7
3.7
51
45.8
Minor BPS
52.4
0.15
2
72.8
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012558
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043519
108226851 - 108235160
8310
ENSAPLT00000013089
108226851 - 108234543
7693