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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108237873_108242362_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108237873 - 108242362
Intron Length:
4490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAG
U12 Branch Point Sequence:
AGCCCCCTGACT
Flanking Amino Acid:
PSDSAPAQQQIKTNGAYGTQ
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
62.8
0.32
1.5
69.9
35.3
Major PPT
88.9
0.88
0.7
81
36.6
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
53.4
0.19
1.7
69.06
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011832
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034777
108237018 - 108267066
30049
ENSAPLT00000032723
108237018 - 108267066
30049
ENSAPLT00000012358
108237018 - 108267066
30049