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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108245920_108247669_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108245920 - 108247669
Intron Length:
1750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATAA
5'SS Class:
major
3'SS Sequence:
ATATCTATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
CAATCTCTAATA
Flanking Amino Acid:
SPGVAKREVEVRSQPPPSTG
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
73.9
32.9
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
78.2
0.63
0.9
74.9
38.9
Minor 5ss
42.8
-0.8
2.9
56
48.2
Minor BPS
54.5
0.14
1.7
61.9
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011832
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012358
108237018 - 108267066
30049